Assistant Professor
Dept. of Genetics, Cell Biology & Anatomy
Bioinformatics and Systems Biology Core
College of Medicine, University of Nebraska Medical Center
Education:
BS, Computer Science, Jilin University, China, 2004
MS, Computer Science, Jilin University,China,
PhD, Bioinformatics, University of North Carolina at Charlotte, 2015
Contact:
Phone: (402) 559-5925
Fax: (402) 559-5942
Email: meng.niu (at) unmc (dot) edu
Mailing Address:
DRC 6006
985805 Nebraska Medical Center
Omaha, NE 68198-5805
Recent Publications:
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J Lee, KQ McKinney, AJ Pavlopoulos, Meng Niu, JW Kang, JW Oh, KP Kim, ... “Altered Proteome of Extracellular Vesicles Derived from Bladder Cancer Patients Urine” Mol. Cells 41 (3), 179-187
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Meng Niu, E Tabari, P Ni, Z Su “Towards a map of cis-regulatory sequences in the human genome” Nucleic Acids Res. 2018 Jun 20; 46(11): 5395–5409.
- Meng Niu, Ehsan Tabari and Zhengchang Su, “De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets” BMC Genomics (2014) 15:1047 DOI:10.1186/1471-2164-15-1047.
- Shaoqiang Zhang, Shan Li, Meng Niu, Phuc Pham and Zhengchang Su, “MotifClick: prediction of cis-regulatory binding sites via merging cliques.” BMC Bioinformatics (2011) 12:238; PMID: 21679436, DOI: 10.1186/1471-2105-12-238.
- Pei, Z.L., Shi, X.H., Meng Niu, Tang, X.N., Liu, L.S., Kong, Y. and Liang, Y.C., “A method of gene-function annotation based on variable precision rough sets.” Journal of Bionic Engineering, 2007, 4(3): 177-184.
Conferences and presentations:
- “Genome-Wide Cis-regulatory Module Prediction and Development of a Proteomics Toolkit”, Carolinas Healthcare System, Cannon Research Center, Proteomics Core Facility Seminar Series, 2015
- “De novo prediction of cis-regulatory modules through integrative analysis of a large number of ChIP datasets,” Intelligent Systems for Molecular Biology (ISMB), 2014
- “Cis-regulatory Module prediction by Integrative Analysis of ChIP data,” Workshop in Next Generation Sequencing (WiNGSs), 2013
- “Cis-regulatory Module prediction by Integrative Analysis of D. mel ChIP-seq data,” Intelligent Systems for Molecular Biology (ISMB), 2012