Services
The faculty members of the Bioinformatics and Systems Biology Core have broadbased experience in the handling of various bioinformatics and systems biology related tasks.
These tasks include developing novel prediction methods for protein-protein and domain-domain interactions, cancer protein interaction networks, protein subcellular localization, motif recognition, phylogenetic analysis, annotation of genes, proteins, pathways and systems, analysis of nextgen sequencing data, SNP and transcriptome data from microarrays.
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Services
Bioinformatics and Systems Biology Core offers following bioinformatics services to the community.
NGS Data Analysis
- Genome assembly and annotation
- RNA-seq data analysis
- Variant calling on exome and whole genome seq data
- Metagenomic profilingTranscriptional profiling of chip-seq data
- Single-cell seq data analysis
Array-based and System Biology Data Services
- Microarray expression analysis
- Copy-number variation analysis for CGH arrays
- Methylation analysis for Infinium 450K arrays
- Functional analysis of gene sets
- Pathway and network analysis
- TCGA data analysis
Web Pages and Databases
- Development of web applications to publish research data
- Development of back-end databases to search and process complex research data
Machine Learning and Research
- Modeling experimental data using machine learning
- Development of custom programs to analyze data
- Motifs/pattern discovery from large datasets
- High-throughput data analysis by supercomputers
Grant Support and Consultation
- Experimental design for NGS data analysis
- Consultation on type of experiments and budget estimation
- Provide support letters to grant proposals
- Generate figures to represent high-dimensional data
Other Research Related IT Support
- Our core is here to help researchers with any research related IT supports. In the past, the core has helped researchers to share data with collaborators, maintain database of their data for easy access, developed personalized blast servers to run blasts on their experimental data or any other selected data, and provided bioinformatics consultations.