General Resources
There are several general information technology resources available to researchers at UNMC. Highlighted below are a few key tools. Past workshops and seminars have been added for your training convenience in the right sidebar.
Clinical Data Access:
There are three ways to access data for research purposes in Epic (depending on data and IRB approval).
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Use of the Research, Education, Administration, and Development of Biomedical Informatics Core
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Use of CRANE, our curated, de-identified data set which contains annotated, encoded, structured Epic data that is extracted weekly (Contact CRANE Coordinator: Jerrod Anzalone)
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Slicer Dicer is a data exploration tool in the Epic for group analysis. Please submit an IT request through Service Now if you need access.
Please review a past presentation to learn more about available resources for clinical data access.
SailPoint:
SailPoint is an Identity Security Cloud system for requesting AD groups via IdentityIQ to user AD accounts for either Olympus (Nebraska Medicine Active Directory) or UNMC (UNMC Active Directory) domains. It is to be used by authorized individuals only. If users AD security group have not yet been migrated into SailPoint, a ticket to Systems Access must be opened to move the AD security group into it for user management.
Please refer to the SailPoint document for managing user access. If you need assistance on SailPoint, please submit your request to IT helpdesk.
Dataverse:
UNMC users can use the Harvard Database. Please log in using your UNMC credentials and upload the dataset through the log in page. Read instructions on file sizes and file formats that are accepted to the repository before uploading. Note: We do not have a local instance of the Dataverse.
BioCyc Database Collection:
BioCyc Database provides tools for navigating, visualizing, and analyzing underlying databases. It also provides tools for analyzing omics data such as:
- Display of individual metabolic pathways, and of full metabolic maps
- Multiple analysis methods for user-supplied omics and multi-omics datasets including painting onto metabolic maps, regulatory maps, and genome maps
- Store groups of genes and pathways in your account as SmartTables; share, analyze, transform those groups
- Comparative analysis tools